Index

A

alpha (conninfpy.harmonize.ComBatModel attribute) alpha1 (conninfpy.eeg_utils.Bands attribute) alpha2 (conninfpy.eeg_utils.Bands attribute) apply_cnbs() (in module conninfpy._enhancement)

apply_fbc_tfnbs() (in module conninfpy._enhancement) apply_nbs() (in module conninfpy._enhancement) apply_ni_tfnbs() (in module conninfpy._enhancement) apply_tfnbs() (in module conninfpy._enhancement)

B

Bands (class in conninfpy.eeg_utils) base_kind (conninfpy.topologies.TopologyScenario attribute) BETA (conninfpy.glm_stats.GLMStatType attribute) beta (conninfpy.harmonize.ComBatModel attribute) beta1 (conninfpy.eeg_utils.Bands attribute) beta2 (conninfpy.eeg_utils.Bands attribute)

BH_FDR (conninfpy.pairwise_stats.StatMethod attribute) BH_FDR_PERM (conninfpy.pairwise_stats.StatMethod attribute) binarize() (in module conninfpy.utils) block_mass() (in module conninfpy.harmonize) BONFERRONI (conninfpy.pairwise_stats.StatMethod attribute) build_design_matrix() (in module conninfpy.glm_stats)

C

C3 (conninfpy.eeg_utils.Electrodes attribute) C4 (conninfpy.eeg_utils.Electrodes attribute) CNBS (conninfpy.pairwise_stats.StatMethod attribute) combat_apply() (in module conninfpy.harmonize) combat_fit() (in module conninfpy.harmonize) combat_harmonize() (in module conninfpy.harmonize) ComBatModel (class in conninfpy.harmonize) CombatResult (class in conninfpy.harmonize) compute_glm_stat() (in module conninfpy.glm_stats) compute_null_dist() (in module conninfpy.pairwise_stats) compute_p_val() (in module conninfpy.pairwise_stats) compute_p_val_glm() (in module conninfpy.glm_stats) compute_p_val_paired_glm() (in module conninfpy.glm_stats) compute_p_values_accelerated() (in module conninfpy.acceleration) compute_t_stat() (in module conninfpy.pairwise_stats) compute_t_stat_diff() (in module conninfpy.pairwise_stats) compute_vif() (in module conninfpy.harmonize) conninfpy._enhancement module conninfpy.acceleration module conninfpy.defaults module

conninfpy.eeg_utils module conninfpy.glm_stats module conninfpy.harmonize module conninfpy.nbs_score module conninfpy.pairwise_stats module conninfpy.synth_datasets module conninfpy.tfnbs_score module conninfpy.topologies module conninfpy.utils module create_pairs_dict() (conninfpy.eeg_utils.PairsElectrodes1020 method) create_prior_weights() (in module conninfpy.utils) Cz (conninfpy.eeg_utils.Electrodes attribute)

D

DEFAULT_EXTENT_EXPONENT (in module conninfpy.defaults) DEFAULT_HEIGHT_EXPONENT (in module conninfpy.defaults) DEFAULT_MIN_CLUSTER_SIZE (in module conninfpy.defaults) DEFAULT_N_PERMUTATIONS (in module conninfpy.defaults) DEFAULT_N_THRESHOLDS_PERMUTATION (in module conninfpy.defaults) DEFAULT_N_THRESHOLDS_SCORING (in module conninfpy.defaults)

DEFAULT_NBS_STAT (in module conninfpy.defaults) DEFAULT_NBS_THRESHOLD (in module conninfpy.defaults) DEFAULT_START_THRESHOLD (in module conninfpy.defaults) delta (conninfpy.eeg_utils.Bands attribute) delta_star (conninfpy.harmonize.ComBatModel attribute) design_diagnostics() (in module conninfpy.harmonize) diagnostics (conninfpy.harmonize.CombatResult attribute)

E

eb (conninfpy.harmonize.ComBatModel attribute) EEGData (class in conninfpy.eeg_utils) effect_mask (conninfpy.topologies.TopologyDataset attribute)

effect_size (conninfpy.topologies.TopologyDataset attribute) electrode_pairs (conninfpy.eeg_utils.PairsElectrodes1020 property) Electrodes (class in conninfpy.eeg_utils)

F

F3 (conninfpy.eeg_utils.Electrodes attribute) F4 (conninfpy.eeg_utils.Electrodes attribute) F7 (conninfpy.eeg_utils.Electrodes attribute) F8 (conninfpy.eeg_utils.Electrodes attribute) FBC_TFNBS (conninfpy.pairwise_stats.StatMethod attribute) fisher_r_to_z() (in module conninfpy.utils) fisher_z() (conninfpy.topologies.TopologyDataset method)

fisher_z_to_r() (in module conninfpy.utils) fit_gamma_tail() (in module conninfpy.acceleration) fit_gpd_tail() (in module conninfpy.acceleration) flatten_upper() (in module conninfpy.harmonize) Fp1 (conninfpy.eeg_utils.Electrodes attribute) Fp2 (conninfpy.eeg_utils.Electrodes attribute) FSTAT (conninfpy.glm_stats.GLMStatType attribute) Fz (conninfpy.eeg_utils.Electrodes attribute)

G

gamma (conninfpy.eeg_utils.Bands attribute) gamma_star (conninfpy.harmonize.ComBatModel attribute) generate() (conninfpy.topologies.TopologyDatasetGenerator method) generate_data() (conninfpy.synth_datasets.ModularDatasetGenerator method) generate_fc_matrices() (in module conninfpy.synth_datasets) generate_multisite_glm_dataset() (in module conninfpy.synth_datasets) get_available_cores() (in module conninfpy.pairwise_stats) get_cnbs_score() (in module conninfpy.nbs_score) get_components() (in module conninfpy.utils) get_fbc_tfnbs_score() (in module conninfpy.tfnbs_score) get_mask_between_modules() (conninfpy.synth_datasets.ModularDatasetGenerator method)

get_mask_within_module() (conninfpy.synth_datasets.ModularDatasetGenerator method) get_name_by_id() (conninfpy.eeg_utils.Bands static method) get_nbs_score() (in module conninfpy.nbs_score) get_network_informed_tfnbs_score() (in module conninfpy.tfnbs_score) get_scenario() (in module conninfpy.topologies) get_scenarios() (in module conninfpy.topologies) get_tfnbs_score() (in module conninfpy.tfnbs_score) get_values() (conninfpy.eeg_utils.Bands static method) GLMStatType (class in conninfpy.glm_stats) group1 (conninfpy.topologies.TopologyDataset attribute) group2 (conninfpy.topologies.TopologyDataset attribute)

I

inverse_reshape_eeg_data() (in module conninfpy.eeg_utils)

L

labels_fn() (conninfpy.topologies.TopologyScenario method)

list_scenarios() (in module conninfpy.topologies)

M

mask_fn (conninfpy.topologies.TopologyScenario attribute) mask_params (conninfpy.topologies.TopologyScenario attribute) meta (conninfpy.topologies.TopologyDataset attribute) model (conninfpy.harmonize.CombatResult attribute) ModularDatasetGenerator (class in conninfpy.synth_datasets) module conninfpy._enhancement conninfpy.acceleration conninfpy.defaults conninfpy.eeg_utils conninfpy.glm_stats conninfpy.harmonize conninfpy.nbs_score conninfpy.pairwise_stats conninfpy.synth_datasets conninfpy.tfnbs_score conninfpy.topologies conninfpy.utils

N

name (conninfpy.topologies.TopologyScenario attribute) NBS (conninfpy.pairwise_stats.StatMethod attribute)

nbs_bct() (in module conninfpy.nbs_score) net_labels (conninfpy.topologies.TopologyDataset attribute) NI_TFNBS (conninfpy.pairwise_stats.StatMethod attribute)

O

O1 (conninfpy.eeg_utils.Electrodes attribute)

O2 (conninfpy.eeg_utils.Electrodes attribute) ONE_SAMPLE (conninfpy.pairwise_stats.TestType attribute)

P

P3 (conninfpy.eeg_utils.Electrodes attribute) P4 (conninfpy.eeg_utils.Electrodes attribute) PAIRED (conninfpy.pairwise_stats.TestType attribute)

PairsElectrodes1020 (class in conninfpy.eeg_utils) preserve_n_cols (conninfpy.harmonize.ComBatModel attribute) Pz (conninfpy.eeg_utils.Electrodes attribute)

R

read_from_eeg_dataframe() (in module conninfpy.eeg_utils)

reshape_eeg_data() (in module conninfpy.eeg_utils)

S

scenario (conninfpy.topologies.TopologyDataset attribute) sigma (conninfpy.harmonize.ComBatModel attribute)

site_labels (conninfpy.harmonize.ComBatModel attribute) StatMethod (class in conninfpy.pairwise_stats)

T

T3 (conninfpy.eeg_utils.Electrodes attribute) T4 (conninfpy.eeg_utils.Electrodes attribute) T5 (conninfpy.eeg_utils.Electrodes attribute) T6 (conninfpy.eeg_utils.Electrodes attribute) TestType (class in conninfpy.pairwise_stats) TFNBS (conninfpy.pairwise_stats.StatMethod attribute)

theta (conninfpy.eeg_utils.Bands attribute) TopologyDataset (class in conninfpy.topologies) TopologyDatasetGenerator (class in conninfpy.topologies) TopologyScenario (class in conninfpy.topologies) TSTAT (conninfpy.glm_stats.GLMStatType attribute) (conninfpy.pairwise_stats.StatMethod attribute) TWO_SAMPLE (conninfpy.pairwise_stats.TestType attribute)

U

unflatten_upper() (in module conninfpy.harmonize)

W

with_mask_params() (conninfpy.topologies.TopologyScenario method)

Y

Y_adjusted (conninfpy.harmonize.CombatResult attribute)